1 HAMP#1
224-293 aa · 70 aa · 11.5% of protein
Raw token
HAMP:224:0.0000000000000027:293:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB936_RS03520
Histidine kinase, Classic
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911415
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029911415#OB936_RS03520Stable P2CS identifier used across views.
GenomeGCF_029911415Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 609 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
304-373 aa · 70 aa · 11.5% of protein
Raw token
HisKA:304:7.61e-16:373:70:643 HATPase_c#3
437-584 aa · 148 aa · 24.3% of protein
Raw token
HATPase_c:437:3.29e-20:584:148:109- Raw architecture: HAMP:224:0.0000000000000027:293:70:69#HisKA:304:7.61e-16:373:70:64#HATPase_c:437:3.29e-20:584:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029911415::NZ_JAOPMD010000006.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span342211-344785Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB936_03520RefSeq proteinWP_033501300.1
Context group ID
GCF_029911415::NZ_JAOPMD010000006.1::G00003Context members
OB936_RS03515OB936_RS03520
Partner locus tags
OB936_RS03515OB936_RS03520
Partner old locus tags
OB936_03515OB936_03520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033501300.1Primary protein accession used for annex mappings.
UniProt accessionA0AA43T4R8Primary UniProt accession resolved in the annex database.
UniProt IDA0AA43T4R8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB936_RS03520Primary locus identifier stored in the genes table.
Old locus tagOB936_03520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMD010000006.1Sequence record reported by the local genomic context database.
Genomic interval342 956-344 785 nt1 830 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span342 211-344 785 ntGCF_029911415::NZ_JAOPMD010000006.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911415::NZ_JAOPMD010000006.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMD010000006.1All displayed genes belong to this local TCS context.
Neighborhood span342 211-344 785 nt2 575 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
342 211 nt344 785 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OB936_RS03515GCF_029911415#OB936_RS03515
RROmpR
342 211-342 942 nt · Forward (+)
OB936_RS03520GCF_029911415#OB936_RS03520
HKClassicCurrent focus
342 956-344 785 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741605#BKAS_RS02855Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1008889
Simplified PFAM architecture for HKOC_1008889
PFAM domain coverage: 268 / 609 aa (44.0%)
1 aa609 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[242-293] | HisKA[305-373] | HATPase_c[437-583]
- Domain count: 3
- Matched identifier: HKOC_1008889
- Positioned domains: HAMP 242-293 ; HisKA 305-373 ; HATPase_c 437-583
Cluster members and taxonomy
Representative gene: GCF_000741605#BKAS_RS02855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911415
AssemblyASM2991141v1 · Contighaploid
Genome composition2 515 135 bp · 56,5% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key