1 Response_reg#1
3-106 aa · 104 aa · 54.2% of protein
Raw token
Response_reg:3:3.14e-21:106:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OB941_RS08435
Response regulator LytTR family
Bifidobacterium catenulatum subsp. kashiwanohense · GCF_029911405
ClassRRTypeLytTRLength192 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029911405#OB941_RS08435Stable P2CS identifier used across views.
GenomeGCF_029911405Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length192 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 192 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa192 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-192 aa · 56 aa · 29.2% of protein
Raw token
LytTR:137:0.00000000000305:192:56:98- Raw architecture: Response_reg:3:3.14e-21:106:106:111#LytTR:137:0.00000000000305:192:56:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029911405::NZ_JAOPMF010000020.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span23566-24144Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOB941_08440RefSeq proteinWP_228429022.1
Context group ID
GCF_029911405::NZ_JAOPMF010000020.1::G00004Context members
OB941_RS08435
Partner locus tags
OB941_RS08435
Partner old locus tags
OB941_08440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228429022.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOB941_RS08435Primary locus identifier stored in the genes table.
Old locus tagOB941_08440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPMF010000020.1Sequence record reported by the local genomic context database.
Genomic interval23 566-24 144 nt579 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 566-24 144 ntGCF_029911405::NZ_JAOPMF010000020.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029911405::NZ_JAOPMF010000020.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPMF010000020.1All displayed genes belong to this local TCS context.
Neighborhood span23 566-24 144 nt579 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 566 nt24 144 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OB941_RS08435GCF_029911405#OB941_RS08435
RRLytTRCurrent focus
23 566-24 144 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009684555#BKKJ1_RS10275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2166429
Simplified PFAM architecture for RROC_2166429
PFAM domain coverage: 160 / 192 aa (83.3%)
1 aa192 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-108] | LytTR[139-192]
- Domain count: 2
- Matched identifier: RROC_2166429
- Positioned domains: Response_reg 3-108 ; Response_reg 3-108 ; LytTR 139-192 ; LytTR 139-192
Cluster members and taxonomy
Representative gene: GCF_009684555#BKKJ1_RS10275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 630 129 · GCF_029911405
AssemblyASM2991140v1 · Contighaploid
Genome composition2 370 816 bp · 56,0% GCBifidobacterium catenulatum subsp. kashiwanohense
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key