1 Response_reg#1
5-92 aa · 88 aa · 42.3% of protein
Raw token
Response_reg:5:3.39e-22:92:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L1K09_RS06140
Response regulator OmpR family
Bifidobacterium breve · GCF_029723715
ClassRRTypeOmpRLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029723715#L1K09_RS06140Stable P2CS identifier used across views.
GenomeGCF_029723715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 208 aa (76.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
131-201 aa · 71 aa · 34.1% of protein
Raw token
Trans_reg_C:131:1.12e-22:201:74:77- Raw architecture: Response_reg:5:3.39e-22:92:88:111#Trans_reg_C:131:1.12e-22:201:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029723715::NZ_JAKEZG010000003.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span231390-232016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL1K09_06110RefSeq proteinWP_021649724.1
Context group ID
GCF_029723715::NZ_JAKEZG010000003.1::G00008Context members
L1K09_RS06140
Partner locus tags
L1K09_RS06140
Partner old locus tags
L1K09_06110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021649724.1Primary protein accession used for annex mappings.
UniProt accessionA0A133KXG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A133KXG8_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL1K09_RS06140Primary locus identifier stored in the genes table.
Old locus tagL1K09_06110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKEZG010000003.1Sequence record reported by the local genomic context database.
Genomic interval231 390-232 016 nt627 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 390-232 016 ntGCF_029723715::NZ_JAKEZG010000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029723715::NZ_JAKEZG010000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKEZG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span231 390-232 016 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 390 nt232 016 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
L1K09_RS06140GCF_029723715#L1K09_RS06140
RROmpRCurrent focus
231 390-232 016 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466545#HMPREF1587_RS02175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2057723
Simplified PFAM architecture for RROC_2057723
PFAM domain coverage: 158 / 208 aa (76.0%)
1 aa208 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-91] | Trans_reg_C[131-201]
- Domain count: 2
- Matched identifier: RROC_2057723
- Positioned domains: Response_reg 5-91 ; Response_reg 5-91 ; Trans_reg_C 131-201 ; Trans_reg_C 131-201
Cluster members and taxonomy
Representative gene: GCF_000466545#HMPREF1587_RS02175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_029723715
AssemblyASM2972371v1 · Contighaploid
Genome composition2 337 929 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 24 · HK 9 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key