1 HisKA_3#1
216-279 aa · 64 aa · 14.2% of protein
Raw token
HisKA_3:216:0.0000000000000159:279:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIE23_RS05770
Histidine kinase, Classic
Bifidobacterium longum · GCF_029340125
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029340125#PIE23_RS05770Stable P2CS identifier used across views.
GenomeGCF_029340125Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 451 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
326-444 aa · 119 aa · 26.4% of protein
Raw token
HATPase_c:326:0.0000000239:444:120:109- Raw architecture: HisKA_3:216:0.0000000000000159:279:64:68#HATPase_c:326:0.0000000239:444:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029340125::NZ_JARJNH010000009.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82067-84075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIE23_05745RefSeq proteinWP_276342962.1
Context group ID
GCF_029340125::NZ_JARJNH010000009.1::G00010Context members
PIE23_RS05765PIE23_RS05770
Partner locus tags
PIE23_RS05765PIE23_RS05770
Partner old locus tags
PIE23_05740PIE23_05745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276342962.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIE23_RS05770Primary locus identifier stored in the genes table.
Old locus tagPIE23_05745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNH010000009.1Sequence record reported by the local genomic context database.
Genomic interval82 720-84 075 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 067-84 075 ntGCF_029340125::NZ_JARJNH010000009.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340125::NZ_JARJNH010000009.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNH010000009.1All displayed genes belong to this local TCS context.
Neighborhood span82 067-84 075 nt2 009 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 067 nt84 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIE23_RS05765GCF_029340125#PIE23_RS05765
RRNarL
82 067-82 720 nt · Reverse (-)
PIE23_RS05770GCF_029340125#PIE23_RS05770
HKClassicCurrent focus
82 720-84 075 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340125#PIE23_RS05770The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1956887
Simplified PFAM architecture for HKOC_1956887
PFAM domain coverage: 66 / 451 aa (14.6%)
1 aa451 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[216-281]
- Domain count: 1
- Matched identifier: HKOC_1956887
- Positioned domains: HisKA_3 216-281
Cluster members and taxonomy
Representative gene: GCF_029340125#PIE23_RS05770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_029340125
AssemblyRC9_19002_UC · Contighaploid
Genome composition2 306 265 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key