1 HisKA_3#1
244-306 aa · 63 aa · 7.7% of protein
Raw token
HisKA_3:244:0.00000000000000199:306:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIG52_RS06220
Histidine kinase, Classic
Bifidobacterium breve · GCF_029340075
ClassHKTypeClassicLength821 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029340075#PIG52_RS06220Stable P2CS identifier used across views.
GenomeGCF_029340075Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length821 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 821 aa (27.5%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa821 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
347-438 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:347:0.000000000000293:438:108:1093 HisKA_3#3
697-767 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:697:0.000011:767:71:68- Raw architecture: HisKA_3:244:0.00000000000000199:306:63:68#HATPase_c:347:0.000000000000293:438:108:109#HisKA_3:697:0.000011:767:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029340075::NZ_JARJNP010000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170915-174208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIG52_06220RefSeq proteinWP_276342650.1
Context group ID
GCF_029340075::NZ_JARJNP010000004.1::G00014Context members
PIG52_RS06215PIG52_RS06220
Partner locus tags
PIG52_RS06215PIG52_RS06220
Partner old locus tags
PIG52_06215PIG52_06220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276342650.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIG52_RS06220Primary locus identifier stored in the genes table.
Old locus tagPIG52_06220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNP010000004.1Sequence record reported by the local genomic context database.
Genomic interval171 743-174 208 nt2 466 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 915-174 208 ntGCF_029340075::NZ_JARJNP010000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340075::NZ_JARJNP010000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span170 915-174 208 nt3 294 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 915 nt174 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIG52_RS06215GCF_029340075#PIG52_RS06215
RRNarL
170 915-171 721 nt · Reverse (-)
PIG52_RS06220GCF_029340075#PIG52_RS06220
HKClassicCurrent focus
171 743-174 208 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340075#PIG52_RS06220The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529142
Simplified PFAM architecture for HKOC_0529142
PFAM domain coverage: 427 / 821 aa (52.0%)
1 aa821 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[14-154] | HisKA_3[244-307] | HATPase_c[347-437] | DUF7134[485-615]
- Domain count: 4
- Matched identifier: HKOC_0529142
- Positioned domains: DUF7134 14-154 ; HisKA_3 244-307 ; HATPase_c 347-437 ; DUF7134 485-615
Cluster members and taxonomy
Representative gene: GCF_029340075#PIG52_RS06220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_029340075
AssemblyRC158_19046_CD · Contighaploid
Genome composition2 317 428 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key