1 HAMP#1
224-293 aa · 70 aa · 11.5% of protein
Raw token
HAMP:224:0.0000000000000022:293:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIG53_RS04825
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_029340035
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029340035#PIG53_RS04825Stable P2CS identifier used across views.
GenomeGCF_029340035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 609 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation3 items
2 HisKA#2
304-373 aa · 70 aa · 11.5% of protein
Raw token
HisKA:304:1.58e-16:373:70:643 HATPase_c#3
437-584 aa · 148 aa · 24.3% of protein
Raw token
HATPase_c:437:9.22e-20:584:148:109- Raw architecture: HAMP:224:0.0000000000000022:293:70:69#HisKA:304:1.58e-16:373:70:64#HATPase_c:437:9.22e-20:584:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029340035::NZ_JARJNE010000003.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span252735-255307Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIG53_04805RefSeq proteinWP_276340570.1
Context group ID
GCF_029340035::NZ_JARJNE010000003.1::G00014Context members
PIG53_RS04825PIG53_RS04830
Partner locus tags
PIG53_RS04825PIG53_RS04830
Partner old locus tags
PIG53_04805PIG53_04810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276340570.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIG53_RS04825Primary locus identifier stored in the genes table.
Old locus tagPIG53_04805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNE010000003.1Sequence record reported by the local genomic context database.
Genomic interval252 735-254 564 nt1 830 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span252 735-255 307 ntGCF_029340035::NZ_JARJNE010000003.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340035::NZ_JARJNE010000003.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNE010000003.1All displayed genes belong to this local TCS context.
Neighborhood span252 735-255 307 nt2 573 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 735 nt255 307 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIG53_RS04825GCF_029340035#PIG53_RS04825
HKClassicCurrent focus
252 735-254 564 nt · Reverse (-)
PIG53_RS04830GCF_029340035#PIG53_RS04830
RROmpR
254 576-255 307 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340035#PIG53_RS04825The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1011347
Simplified PFAM architecture for HKOC_1011347
PFAM domain coverage: 268 / 609 aa (44.0%)
1 aa609 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[242-293] | HisKA[305-373] | HATPase_c[437-583]
- Domain count: 3
- Matched identifier: HKOC_1011347
- Positioned domains: HAMP 242-293 ; HisKA 305-373 ; HATPase_c 437-583
Cluster members and taxonomy
Representative gene: GCF_029340035#PIG53_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_029340035
AssemblyRC1_18990_UC · Contighaploid
Genome composition2 289 430 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key