1 HAMP#1
56-127 aa · 72 aa · 20.1% of protein
Raw token
HAMP:56:5.81e-18:127:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PIG53_RS04165
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_029340035
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029340035#PIG53_RS04165Stable P2CS identifier used across views.
GenomeGCF_029340035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 358 aa (69.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:0.00000000000000287:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.0% of protein
Raw token
HATPase_c:240:1.77e-22:350:112:109- Raw architecture: HAMP:56:5.81e-18:127:72:69#HisKA:131:0.00000000000000287:195:65:64#HATPase_c:240:1.77e-22:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029340035::NZ_JARJNE010000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95584-97408Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPIG53_04145RefSeq proteinWP_276340540.1
Context group ID
GCF_029340035::NZ_JARJNE010000003.1::G00010Context members
PIG53_RS04160PIG53_RS04165
Partner locus tags
PIG53_RS04160PIG53_RS04165
Partner old locus tags
PIG53_04140PIG53_04145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276340540.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPIG53_RS04165Primary locus identifier stored in the genes table.
Old locus tagPIG53_04145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJNE010000003.1Sequence record reported by the local genomic context database.
Genomic interval96 332-97 408 nt1 077 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 584-97 408 ntGCF_029340035::NZ_JARJNE010000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029340035::NZ_JARJNE010000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJNE010000003.1All displayed genes belong to this local TCS context.
Neighborhood span95 584-97 408 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 584 nt97 408 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PIG53_RS04160GCF_029340035#PIG53_RS04160
RROmpR
95 584-96 312 nt · Forward (+)
PIG53_RS04165GCF_029340035#PIG53_RS04165
HKClassicCurrent focus
96 332-97 408 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029340035#PIG53_RS04165The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2762547
Simplified PFAM architecture for HKOC_2762547
PFAM domain coverage: 231 / 358 aa (64.5%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2762547
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_029340035#PIG53_RS04165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_029340035
AssemblyRC1_18990_UC · Contighaploid
Genome composition2 289 430 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key