1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:3.07e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2W93_RS16760
Response regulator OmpR family
Clostridioides difficile · GCF_029310935
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029310935#P2W93_RS16760Stable P2CS identifier used across views.
GenomeGCF_029310935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.23e-29:223:76:77- Raw architecture: Response_reg:4:3.07e-31:113:111:111#Trans_reg_C:148:1.23e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029310935::NZ_JARJHO010000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30649-32584Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2W93_16735RefSeq proteinWP_070117196.1
Context group ID
GCF_029310935::NZ_JARJHO010000014.1::G00005Context members
P2W93_RS16755P2W93_RS16760
Partner locus tags
P2W93_RS16755P2W93_RS16760
Partner old locus tags
P2W93_16730P2W93_16735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070117196.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2W93_RS16760Primary locus identifier stored in the genes table.
Old locus tagP2W93_16735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARJHO010000014.1Sequence record reported by the local genomic context database.
Genomic interval31 901-32 584 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 649-32 584 ntGCF_029310935::NZ_JARJHO010000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029310935::NZ_JARJHO010000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARJHO010000014.1All displayed genes belong to this local TCS context.
Neighborhood span30 649-32 584 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 649 nt32 584 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2W93_RS16755GCF_029310935#P2W93_RS16755
HKClassic
30 649-31 890 nt · Reverse (-)
P2W93_RS16760GCF_029310935#P2W93_RS16760
RROmpRCurrent focus
31 901-32 584 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001757585#BW25_RS11920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1362203
Simplified PFAM architecture for RROC_1362203
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1362203
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_001757585#BW25_RS11920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_029310935
AssemblyASM2931093v1 · Scaffoldhaploid
Genome composition4 190 515 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key