1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:5.33e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P2R19_RS02085
Response regulator OmpR family
Bacillus sp. Cr_R16 · GCF_029222545
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029222545#P2R19_RS02085Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:154:2.11e-35:229:76:77- Raw architecture: Response_reg:6:5.33e-39:115:111:111#Trans_reg_C:154:2.11e-35:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029222545::NZ_JARHXJ010000011.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107928-110480Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP2R19_02085RefSeq proteinWP_000971865.1
Context group ID
GCF_029222545::NZ_JARHXJ010000011.1::G00007Context members
P2R19_RS02080P2R19_RS02085
Partner locus tags
P2R19_RS02080P2R19_RS02085
Partner old locus tags
P2R19_02080P2R19_02085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000971865.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6FXG9Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6FXG9_BACUDDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP2R19_RS02085Primary locus identifier stored in the genes table.
Old locus tagP2R19_02085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARHXJ010000011.1Sequence record reported by the local genomic context database.
Genomic interval109 773-110 480 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 928-110 480 ntGCF_029222545::NZ_JARHXJ010000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029222545::NZ_JARHXJ010000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARHXJ010000011.1All displayed genes belong to this local TCS context.
Neighborhood span107 928-110 480 nt2 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 928 nt110 480 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P2R19_RS02080GCF_029222545#P2R19_RS02080
HKClassic
107 928-109 769 nt · Reverse (-)
P2R19_RS02085GCF_029222545#P2R19_RS02085
RROmpRCurrent focus
109 773-110 480 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS27245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016387
Simplified PFAM architecture for RROC_1016387
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1016387
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS27245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 031 020 · GCF_029222545
AssemblyASM2922254v1 · Contighaploid
Genome composition5 946 711 bp · 35,0% GCBacillus sp. Cr_R16
Signal transduction countsGenes 127 · HK 69 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key