1 Response_reg#1
3-112 aa · 110 aa · 65.1% of protein
Raw token
Response_reg:3:9.19e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PZH45_RS12810
Response regulator, CheY family
Faecalibacterium prausnitzii · GCF_029076745
ClassRRTypeCheYLength169 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029076745#PZH45_RS12810Stable P2CS identifier used across views.
GenomeGCF_029076745Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length169 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 169 aa (65.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa169 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:9.19e-16:112:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029076745::NZ_JARFIQ010000234.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4830-5339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPZH45_12920RefSeq proteinWP_337926931.1
Context group ID
GCF_029076745::NZ_JARFIQ010000234.1::G00011Context members
PZH45_RS12810
Partner locus tags
PZH45_RS12810
Partner old locus tags
PZH45_12920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_337926931.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPZH45_RS12810Primary locus identifier stored in the genes table.
Old locus tagPZH45_12920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARFIQ010000234.1Sequence record reported by the local genomic context database.
Genomic interval4 830-5 339 nt510 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 830-5 339 ntGCF_029076745::NZ_JARFIQ010000234.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029076745::NZ_JARFIQ010000234.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARFIQ010000234.1All displayed genes belong to this local TCS context.
Neighborhood span4 830-5 339 nt510 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 830 nt5 339 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PZH45_RS12810GCF_029076745#PZH45_RS12810
RRCheYCurrent focus
4 830-5 339 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209855#FPR_RS01630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0882441
Simplified PFAM architecture for RROC_0882441
PFAM domain coverage: 201 / 240 aa (83.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0882441
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_000209855#FPR_RS01630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_029076745
AssemblyASM2907674v1 · Contighaploid
Genome composition2 943 763 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key