1 HAMP#1
101-166 aa · 66 aa · 16.8% of protein
Raw token
HAMP:101:0.0000000000159:166:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PZH45_RS12165
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_029076745
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029076745#PZH45_RS12165Stable P2CS identifier used across views.
GenomeGCF_029076745Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 392 aa (56.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.3% of protein
Raw token
HisKA:177:0.0000000000261:240:64:643 HATPase_c#3
286-377 aa · 92 aa · 23.5% of protein
Raw token
HATPase_c:286:1.61e-21:377:93:109- Raw architecture: HAMP:101:0.0000000000159:166:68:69#HisKA:177:0.0000000000261:240:64:64#HATPase_c:286:1.61e-21:377:93:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029076745::NZ_JARFIQ010000232.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37316-39156Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPZH45_12270RefSeq proteinWP_217285503.1
Context group ID
GCF_029076745::NZ_JARFIQ010000232.1::G00008Context members
PZH45_RS12160PZH45_RS12165
Partner locus tags
PZH45_RS12160PZH45_RS12165
Partner old locus tags
PZH45_12265PZH45_12270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217285503.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPZH45_RS12165Primary locus identifier stored in the genes table.
Old locus tagPZH45_12270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARFIQ010000232.1Sequence record reported by the local genomic context database.
Genomic interval37 978-39 156 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 316-39 156 ntGCF_029076745::NZ_JARFIQ010000232.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029076745::NZ_JARFIQ010000232.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARFIQ010000232.1All displayed genes belong to this local TCS context.
Neighborhood span37 316-39 156 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 316 nt39 156 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PZH45_RS12160GCF_029076745#PZH45_RS12160
RROmpR
37 316-37 990 nt · Forward (+)
PZH45_RS12165GCF_029076745#PZH45_RS12165
HKClassicCurrent focus
37 978-39 156 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019061315#KTT80_RS10970Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2514380
Simplified PFAM architecture for HKOC_2514380
PFAM domain coverage: 207 / 392 aa (52.8%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[115-165] | HisKA[178-240] | HATPase_c[286-378]
- Domain count: 3
- Matched identifier: HKOC_2514380
- Positioned domains: HAMP 115-165 ; HisKA 178-240 ; HATPase_c 286-378
Cluster members and taxonomy
Representative gene: GCF_019061315#KTT80_RS10970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_029076745
AssemblyASM2907674v1 · Contighaploid
Genome composition2 943 763 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key