1 HAMP#1
159-225 aa · 67 aa · 14.7% of protein
Raw token
HAMP:159:0.00000418:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PZH45_RS11085
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_029076745
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029076745#PZH45_RS11085Stable P2CS identifier used across views.
GenomeGCF_029076745Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 455 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-302 aa · 67 aa · 14.7% of protein
Raw token
HisKA:236:0.00000000000197:302:67:643 HATPase_c#3
351-452 aa · 102 aa · 22.4% of protein
Raw token
HATPase_c:351:1.54e-17:452:106:109- Raw architecture: HAMP:159:0.00000418:225:69:69#HisKA:236:0.00000000000197:302:67:64#HATPase_c:351:1.54e-17:452:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029076745::NZ_JARFIQ010000230.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9678-11761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPZH45_11170RefSeq proteinWP_217285341.1
Context group ID
GCF_029076745::NZ_JARFIQ010000230.1::G00004Context members
PZH45_RS11085PZH45_RS11090
Partner locus tags
PZH45_RS11085PZH45_RS11090
Partner old locus tags
PZH45_11170PZH45_11175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217285341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPZH45_RS11085Primary locus identifier stored in the genes table.
Old locus tagPZH45_11170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARFIQ010000230.1Sequence record reported by the local genomic context database.
Genomic interval9 678-11 045 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 678-11 761 ntGCF_029076745::NZ_JARFIQ010000230.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029076745::NZ_JARFIQ010000230.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARFIQ010000230.1All displayed genes belong to this local TCS context.
Neighborhood span9 678-11 761 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 678 nt11 761 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PZH45_RS11085GCF_029076745#PZH45_RS11085
HKClassicCurrent focus
9 678-11 045 nt · Reverse (-)
PZH45_RS11090GCF_029076745#PZH45_RS11090
RROmpR
11 042-11 761 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019061315#KTT80_RS07520Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1905399
Simplified PFAM architecture for HKOC_1905399
PFAM domain coverage: 169 / 455 aa (37.1%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-302] | HATPase_c[351-452]
- Domain count: 2
- Matched identifier: HKOC_1905399
- Positioned domains: HisKA 236-302 ; HATPase_c 351-452
Cluster members and taxonomy
Representative gene: GCF_019061315#KTT80_RS07520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_029076745
AssemblyASM2907674v1 · Contighaploid
Genome composition2 943 763 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key