1 Response_reg#1
4-112 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:4:9.58e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PZH45_RS06290
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_029076745
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_029076745#PZH45_RS06290Stable P2CS identifier used across views.
GenomeGCF_029076745Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 226 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-222 aa · 79 aa · 35.0% of protein
Raw token
Trans_reg_C:144:1.09e-24:222:79:77- Raw architecture: Response_reg:4:9.58e-32:112:111:111#Trans_reg_C:144:1.09e-24:222:79:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_029076745::NZ_JARFIQ010000195.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1060-1740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPZH45_06335RefSeq proteinWP_044960186.1
Context group ID
GCF_029076745::NZ_JARFIQ010000195.1::G00027Context members
PZH45_RS06290
Partner locus tags
PZH45_RS06290
Partner old locus tags
PZH45_06335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044960186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPZH45_RS06290Primary locus identifier stored in the genes table.
Old locus tagPZH45_06335Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARFIQ010000195.1Sequence record reported by the local genomic context database.
Genomic interval1 060-1 740 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 060-1 740 ntGCF_029076745::NZ_JARFIQ010000195.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029076745::NZ_JARFIQ010000195.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARFIQ010000195.1All displayed genes belong to this local TCS context.
Neighborhood span1 060-1 740 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 060 nt1 740 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PZH45_RS06290GCF_029076745#PZH45_RS06290
RROmpRCurrent focus
1 060-1 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS06250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408467
Simplified PFAM architecture for RROC_1408467
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[145-221]
- Domain count: 2
- Matched identifier: RROC_1408467
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 145-221 ; Trans_reg_C 145-221
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS06250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_029076745
AssemblyASM2907674v1 · Contighaploid
Genome composition2 943 763 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key