1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000142:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PZH45_RS05580
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_029076745
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_029076745#PZH45_RS05580Stable P2CS identifier used across views.
GenomeGCF_029076745Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 343 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-343 aa · 103 aa · 30.0% of protein
Raw token
HATPase_c:241:1.5e-28:343:103:109- Raw architecture: HisKA:123:0.000000142:189:67:64#HATPase_c:241:1.5e-28:343:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_029076745::NZ_JARFIQ010000022.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11884-13604Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPZH45_05635RefSeq proteinWP_238057177.1
Context group ID
GCF_029076745::NZ_JARFIQ010000022.1::G00026Context members
PZH45_RS05580PZH45_RS05585
Partner locus tags
PZH45_RS05580PZH45_RS05585
Partner old locus tags
PZH45_05635PZH45_05640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238057177.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPZH45_RS05580Primary locus identifier stored in the genes table.
Old locus tagPZH45_05635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARFIQ010000022.1Sequence record reported by the local genomic context database.
Genomic interval11 884-12 915 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 884-13 604 ntGCF_029076745::NZ_JARFIQ010000022.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_029076745::NZ_JARFIQ010000022.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARFIQ010000022.1All displayed genes belong to this local TCS context.
Neighborhood span11 884-13 604 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 884 nt13 604 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PZH45_RS05580GCF_029076745#PZH45_RS05580
HKClassicCurrent focus
11 884-12 915 nt · Reverse (-)
PZH45_RS05585GCF_029076745#PZH45_RS05585
RROmpR
12 912-13 604 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022136525#L0P70_RS12545Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2830015
Simplified PFAM architecture for HKOC_2830015
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2830015
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_022136525#L0P70_RS12545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_029076745
AssemblyASM2907674v1 · Contighaploid
Genome composition2 943 763 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 27 · RR 28CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key