1 Response_reg#1
25-136 aa · 112 aa · 46.9% of protein
Raw token
Response_reg:25:1.27e-27:136:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PXI12_RS07910
Response regulator NarL family
Bifidobacterium longum · GCF_028894815
ClassRRTypeNarLLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028894815#PXI12_RS07910Stable P2CS identifier used across views.
GenomeGCF_028894815Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 239 aa (70.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
174-230 aa · 57 aa · 23.8% of protein
Raw token
HTH_LUXR:174:5.94e-16:230:58:58- Raw architecture: Response_reg:25:1.27e-27:136:112:111#HTH_LUXR:174:5.94e-16:230:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028894815::NZ_JARCPQ010000007.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22236-22955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPXI12_07910RefSeq proteinWP_274900305.1
Context group ID
GCF_028894815::NZ_JARCPQ010000007.1::G00012Context members
PXI12_RS07910
Partner locus tags
PXI12_RS07910
Partner old locus tags
PXI12_07910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_274900305.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPXI12_RS07910Primary locus identifier stored in the genes table.
Old locus tagPXI12_07910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARCPQ010000007.1Sequence record reported by the local genomic context database.
Genomic interval22 236-22 955 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 236-22 955 ntGCF_028894815::NZ_JARCPQ010000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028894815::NZ_JARCPQ010000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARCPQ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span22 236-22 955 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 236 nt22 955 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PXI12_RS07910GCF_028894815#PXI12_RS07910
RRNarLCurrent focus
22 236-22 955 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028894815#PXI12_RS07910The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0922524
Simplified PFAM architecture for RROC_0922524
PFAM domain coverage: 165 / 239 aa (69.0%)
1 aa239 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[23-136] | Sigma70_r4_2[168-218]
- Domain count: 2
- Matched identifier: RROC_0922524
- Positioned domains: Response_reg 23-136 ; Sigma70_r4_2 168-218
Cluster members and taxonomy
Representative gene: GCF_028894815#PXI12_RS07910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_028894815
AssemblyASM2889481v1 · Contighaploid
Genome composition2 323 066 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key