1 Response_reg#1
34-135 aa · 102 aa · 47.0% of protein
Raw token
Response_reg:34:0.000000000013:135:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PXI12_RS03885
Response regulator, unclassified
Bifidobacterium longum · GCF_028894815
ClassRRTypeunclassifiedLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028894815#PXI12_RS03885Stable P2CS identifier used across views.
GenomeGCF_028894815Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage102 / 217 aa (47.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:34:0.000000000013:135:102:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028894815::NZ_JARCPQ010000003.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span57273-57926Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPXI12_03885RefSeq proteinWP_013410883.1
Context group ID
GCF_028894815::NZ_JARCPQ010000003.1::G00008Context members
PXI12_RS03885
Partner locus tags
PXI12_RS03885
Partner old locus tags
PXI12_03885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_013410883.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPXI12_RS03885Primary locus identifier stored in the genes table.
Old locus tagPXI12_03885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARCPQ010000003.1Sequence record reported by the local genomic context database.
Genomic interval57 273-57 926 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 273-57 926 ntGCF_028894815::NZ_JARCPQ010000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028894815::NZ_JARCPQ010000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARCPQ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span57 273-57 926 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 273 nt57 926 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PXI12_RS03885GCF_028894815#PXI12_RS03885
RRunclassifiedCurrent focus
57 273-57 926 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370035#CE158_RS11325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1129206
Simplified PFAM architecture for RROC_1129206
PFAM domain coverage: 112 / 232 aa (48.3%)
1 aa232 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[49-160]
- Domain count: 1
- Matched identifier: RROC_1129206
- Positioned domains: Response_reg 49-160 ; Response_reg 49-160
Cluster members and taxonomy
Representative gene: GCF_003370035#CE158_RS11325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_028894815
AssemblyASM2889481v1 · Contighaploid
Genome composition2 323 066 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key