1 Response_reg#1
4-113 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:4:8.49e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PXI12_RS01650
Response regulator OmpR family
Bifidobacterium longum · GCF_028894815
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028894815#PXI12_RS01650Stable P2CS identifier used across views.
GenomeGCF_028894815Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-235 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:159:3.53e-32:235:77:77- Raw architecture: Response_reg:4:8.49e-36:113:111:111#Trans_reg_C:159:3.53e-32:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028894815::NZ_JARCPQ010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span388713-391129Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPXI12_01650RefSeq proteinWP_136656135.1
Context group ID
GCF_028894815::NZ_JARCPQ010000001.1::G00003Context members
PXI12_RS01650PXI12_RS01655
Partner locus tags
PXI12_RS01650PXI12_RS01655
Partner old locus tags
PXI12_01650PXI12_01655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_136656135.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPXI12_RS01650Primary locus identifier stored in the genes table.
Old locus tagPXI12_01650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARCPQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval388 713-389 435 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span388 713-391 129 ntGCF_028894815::NZ_JARCPQ010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028894815::NZ_JARCPQ010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARCPQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span388 713-391 129 nt2 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
388 713 nt391 129 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PXI12_RS01650GCF_028894815#PXI12_RS01650
RROmpRCurrent focus
388 713-389 435 nt · Forward (+)
PXI12_RS01655GCF_028894815#PXI12_RS01655
HKClassic
389 432-391 129 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004936435#Blongum51A_RS07490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0889527
Simplified PFAM architecture for RROC_0889527
PFAM domain coverage: 187 / 240 aa (77.9%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[159-235]
- Domain count: 2
- Matched identifier: RROC_0889527
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 159-235 ; Trans_reg_C 159-235
Cluster members and taxonomy
Representative gene: GCF_004936435#Blongum51A_RS07490
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 2 over 2 total members. Page 1 / 1.
GCF_004936435#Blongum51A_RS07490 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_028894815
AssemblyASM2889481v1 · Contighaploid
Genome composition2 323 066 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key