1 Response_reg#1
21-121 aa · 101 aa · 40.2% of protein
Raw token
Response_reg:21:2.31e-19:121:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PT259_RS08520
Response regulator LytTR family
Bifidobacterium adolescentis · GCF_028743295
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028743295#PT259_RS08520Stable P2CS identifier used across views.
GenomeGCF_028743295Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 251 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-243 aa · 92 aa · 36.7% of protein
Raw token
LytTR:152:8.16e-21:243:97:98- Raw architecture: Response_reg:21:2.31e-19:121:104:111#LytTR:152:8.16e-21:243:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028743295::NZ_CP117956.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2026701-2027456Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_028743295::NZ_CP117956.1::G00015Context members
PT259_RS08520
Partner locus tags
PT259_RS08520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743886.1Primary protein accession used for annex mappings.
UniProt accessionA1A3U2Primary UniProt accession resolved in the annex database.
UniProt IDA1A3U2_BIFAADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPT259_RS08520Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP117956.1Sequence record reported by the local genomic context database.
Genomic interval2 026 701-2 027 456 nt756 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 026 701-2 027 456 ntGCF_028743295::NZ_CP117956.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028743295::NZ_CP117956.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117956.1All displayed genes belong to this local TCS context.
Neighborhood span2 026 701-2 027 456 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 026 701 nt2 027 456 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PT259_RS08520GCF_028743295#PT259_RS08520
RRLytTRCurrent focus
2 026 701-2 027 456 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010425#BAD_RS08380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0711665
Simplified PFAM architecture for RROC_0711665
PFAM domain coverage: 192 / 251 aa (76.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[20-122] | LytTR[155-243]
- Domain count: 2
- Matched identifier: RROC_0711665
- Positioned domains: Response_reg 20-122 ; Response_reg 20-122 ; LytTR 155-243 ; LytTR 155-243
Cluster members and taxonomy
Representative gene: GCF_000010425#BAD_RS08380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_028743295
AssemblyASM2874329v1 · Complete Genomehaploid
Genome composition2 089 645 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key