1 Response_reg#1
2-106 aa · 105 aa · 50.2% of protein
Raw token
Response_reg:2:3.85e-27:106:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PT259_RS05620
Response regulator NarL family
Bifidobacterium adolescentis · GCF_028743295
ClassRRTypeNarLLength209 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028743295#PT259_RS05620Stable P2CS identifier used across views.
GenomeGCF_028743295Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length209 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 209 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa209 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
144-200 aa · 57 aa · 27.3% of protein
Raw token
HTH_LUXR:144:4.03e-17:200:58:58- Raw architecture: Response_reg:2:3.85e-27:106:105:111#HTH_LUXR:144:4.03e-17:200:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028743295::NZ_CP117956.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1289165-1289794Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_028743295::NZ_CP117956.1::G00012Context members
PT259_RS05620
Partner locus tags
PT259_RS05620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_011743394.1Primary protein accession used for annex mappings.
UniProt accessionA1A286Primary UniProt accession resolved in the annex database.
UniProt IDA1A286_BIFAADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPT259_RS05620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP117956.1Sequence record reported by the local genomic context database.
Genomic interval1 289 165-1 289 794 nt630 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 289 165-1 289 794 ntGCF_028743295::NZ_CP117956.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028743295::NZ_CP117956.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP117956.1All displayed genes belong to this local TCS context.
Neighborhood span1 289 165-1 289 794 nt630 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 289 165 nt1 289 794 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PT259_RS05620GCF_028743295#PT259_RS05620
RRNarLCurrent focus
1 289 165-1 289 794 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108135#LMG10733_RS05735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Sigma70_r4_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_1207905
Simplified PFAM architecture for RROC_1207905
PFAM domain coverage: 159 / 230 aa (69.1%)
1 aa230 aa
Response_regSigma70_r4_2
- Simplified architecture: Response_reg + Sigma70_r4_2
- Raw architecture: Response_reg[15-127] | Sigma70_r4_2[159-204]
- Domain count: 2
- Matched identifier: RROC_1207905
- Positioned domains: Response_reg 15-127 ; Response_reg 15-127 ; Sigma70_r4_2 159-204 ; Sigma70_r4_2 159-204
Cluster members and taxonomy
Representative gene: GCF_002108135#LMG10733_RS05735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_028743295
AssemblyASM2874329v1 · Complete Genomehaploid
Genome composition2 089 645 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 27 · HK 12 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key