1 HisKA#1
125-188 aa · 64 aa · 18.3% of protein
Raw token
HisKA:125:0.000000000000314:188:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM46_RS07865
Histidine kinase, Classic
Clostridioides difficile · GCF_028599635
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028599635#PSM46_RS07865Stable P2CS identifier used across views.
GenomeGCF_028599635Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 350 aa (46.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-334 aa · 97 aa · 27.7% of protein
Raw token
HATPase_c:238:2.49e-21:334:97:109- Raw architecture: HisKA:125:0.000000000000314:188:64:64#HATPase_c:238:2.49e-21:334:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028599635::NZ_JAQRKI010000004.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span141298-143101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM46_07865RefSeq proteinWP_273622231.1
Context group ID
GCF_028599635::NZ_JAQRKI010000004.1::G00039Context members
PSM46_RS07860PSM46_RS07865
Partner locus tags
PSM46_RS07860PSM46_RS07865
Partner old locus tags
PSM46_07860PSM46_07865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_273622231.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM46_RS07865Primary locus identifier stored in the genes table.
Old locus tagPSM46_07865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRKI010000004.1Sequence record reported by the local genomic context database.
Genomic interval142 049-143 101 nt1 053 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span141 298-143 101 ntGCF_028599635::NZ_JAQRKI010000004.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028599635::NZ_JAQRKI010000004.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRKI010000004.1All displayed genes belong to this local TCS context.
Neighborhood span141 298-143 101 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 298 nt143 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM46_RS07860GCF_028599635#PSM46_RS07860
RROmpR
141 298-141 999 nt · Forward (+)
PSM46_RS07865GCF_028599635#PSM46_RS07865
HKClassicCurrent focus
142 049-143 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028599635#PSM46_RS07865The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2799417
Simplified PFAM architecture for HKOC_2799417
PFAM domain coverage: 161 / 350 aa (46.0%)
1 aa350 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[126-188] | HATPase_c[238-335]
- Domain count: 2
- Matched identifier: HKOC_2799417
- Positioned domains: HisKA 126-188 ; HATPase_c 238-335
Cluster members and taxonomy
Representative gene: GCF_028599635#PSM46_RS07865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028599635
AssemblyASM2859963v1 · Contighaploid
Genome composition4 116 546 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key