1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.000000000000823:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM49_RS15565
Histidine kinase, Classic
Clostridioides difficile · GCF_028597345
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028597345#PSM49_RS15565Stable P2CS identifier used across views.
GenomeGCF_028597345Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 468 aa (37.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-465 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:357:1.94e-18:465:110:109- Raw architecture: HisKA:245:0.000000000000823:309:65:64#HATPase_c:357:1.94e-18:465:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028597345::NZ_JAQRJV010000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91011-93175Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM49_15620RefSeq proteinWP_003418198.1
Context group ID
GCF_028597345::NZ_JAQRJV010000014.1::G00005Context members
PSM49_RS15565PSM49_RS15570
Partner locus tags
PSM49_RS15565PSM49_RS15570
Partner old locus tags
PSM49_15620PSM49_15625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003418198.1Primary protein accession used for annex mappings.
UniProt accessionD5Q0Q3Primary UniProt accession resolved in the annex database.
UniProt IDD5Q0Q3_CLODIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM49_RS15565Primary locus identifier stored in the genes table.
Old locus tagPSM49_15620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRJV010000014.1Sequence record reported by the local genomic context database.
Genomic interval91 011-92 417 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 011-93 175 ntGCF_028597345::NZ_JAQRJV010000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028597345::NZ_JAQRJV010000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRJV010000014.1All displayed genes belong to this local TCS context.
Neighborhood span91 011-93 175 nt2 165 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 011 nt93 175 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM49_RS15565GCF_028597345#PSM49_RS15565
HKClassicCurrent focus
91 011-92 417 nt · Reverse (-)
PSM49_RS15570GCF_028597345#PSM49_RS15570
RROmpR
92 462-93 175 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0203390Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737648
Simplified PFAM architecture for HKOC_1737648
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1737648
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0203390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028597345
AssemblyASM2859734v1 · Contighaploid
Genome composition4 075 959 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 48 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key