1 Response_reg#1
6-118 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:6:1.77e-28:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM40_RS07535
Response regulator NarL family
Clostridioides difficile · GCF_028597135
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028597135#PSM40_RS07535Stable P2CS identifier used across views.
GenomeGCF_028597135Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 215 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-207 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:153:7.67e-21:207:55:58- Raw architecture: Response_reg:6:1.77e-28:118:113:111#HTH_LUXR:153:7.67e-21:207:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028597135::NZ_JAQRJK010000005.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67375-69178Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM40_07535RefSeq proteinWP_009905386.1
Context group ID
GCF_028597135::NZ_JAQRJK010000005.1::G00038Context members
PSM40_RS07530PSM40_RS07535
Partner locus tags
PSM40_RS07530PSM40_RS07535
Partner old locus tags
PSM40_07530PSM40_07535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905386.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GVP8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GVP8_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM40_RS07535Primary locus identifier stored in the genes table.
Old locus tagPSM40_07535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRJK010000005.1Sequence record reported by the local genomic context database.
Genomic interval68 531-69 178 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 375-69 178 ntGCF_028597135::NZ_JAQRJK010000005.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028597135::NZ_JAQRJK010000005.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRJK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span67 375-69 178 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 375 nt69 178 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM40_RS07530GCF_028597135#PSM40_RS07530
HKClassic
67 375-68 538 nt · Forward (+)
PSM40_RS07535GCF_028597135#PSM40_RS07535
RRNarLCurrent focus
68 531-69 178 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0206210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906741
Simplified PFAM architecture for RROC_1906741
PFAM domain coverage: 168 / 215 aa (78.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1906741
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 152-207 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0206210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028597135
AssemblyASM2859713v1 · Contighaploid
Genome composition3 933 385 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key