1 HisKA#1
457-524 aa · 68 aa · 9.9% of protein
Raw token
HisKA:457:0.0000000000000264:524:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL99_RS01225
Histidine kinase, Classic
Clostridioides difficile · GCF_028597105
ClassHKTypeClassicLength690 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028597105#PSL99_RS01225Stable P2CS identifier used across views.
GenomeGCF_028597105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length690 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 690 aa (23.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa690 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
570-663 aa · 94 aa · 13.6% of protein
Raw token
HATPase_c:570:0.00000000000074:663:98:109- Raw architecture: HisKA:457:0.0000000000000264:524:68:64#HATPase_c:570:0.00000000000074:663:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028597105::NZ_JAQRJI010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span261813-264773Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL99_01225RefSeq proteinWP_003423182.1
Context group ID
GCF_028597105::NZ_JAQRJI010000001.1::G00017Context members
PSL99_RS01220PSL99_RS01225
Partner locus tags
PSL99_RS01220PSL99_RS01225
Partner old locus tags
PSL99_01220PSL99_01225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423182.1Primary protein accession used for annex mappings.
UniProt accessionD5Q311Primary UniProt accession resolved in the annex database.
UniProt IDD5Q311_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL99_RS01225Primary locus identifier stored in the genes table.
Old locus tagPSL99_01225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRJI010000001.1Sequence record reported by the local genomic context database.
Genomic interval262 701-264 773 nt2 073 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span261 813-264 773 ntGCF_028597105::NZ_JAQRJI010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028597105::NZ_JAQRJI010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRJI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span261 813-264 773 nt2 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
261 813 nt264 773 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSL99_RS01220GCF_028597105#PSL99_RS01220
RROmpR
261 813-262 505 nt · Forward (+)
PSL99_RS01225GCF_028597105#PSL99_RS01225
HKClassicCurrent focus
262 701-264 773 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0211225Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0790899
Simplified PFAM architecture for HKOC_0790899
PFAM domain coverage: 160 / 690 aa (23.2%)
1 aa690 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[457-524] | HATPase_c[571-662]
- Domain count: 2
- Matched identifier: HKOC_0790899
- Positioned domains: HisKA 457-524 ; HATPase_c 571-662
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0211225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028597105
AssemblyASM2859710v1 · Contighaploid
Genome composition3 965 548 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key