1 HisKA#1
245-313 aa · 69 aa · 14.8% of protein
Raw token
HisKA:245:0.000000000000308:313:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL66_RS00820
Histidine kinase, Classic
Clostridioides difficile · GCF_028596765
ClassHKTypeClassicLength465 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028596765#PSL66_RS00820Stable P2CS identifier used across views.
GenomeGCF_028596765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length465 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 465 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
360-464 aa · 105 aa · 22.6% of protein
Raw token
HATPase_c:360:1.65e-28:464:106:109- Raw architecture: HisKA:245:0.000000000000308:313:69:64#HATPase_c:360:1.65e-28:464:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028596765::NZ_JAQRIR010000001.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span169088-170485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL66_00820RefSeq proteinWP_003424094.1
Context group ID
GCF_028596765::NZ_JAQRIR010000001.1::G00014Context members
PSL66_RS00820
Partner locus tags
PSL66_RS00820
Partner old locus tags
PSL66_00820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424094.1Primary protein accession used for annex mappings.
UniProt accessionD5Q444Primary UniProt accession resolved in the annex database.
UniProt IDD5Q444_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL66_RS00820Primary locus identifier stored in the genes table.
Old locus tagPSL66_00820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIR010000001.1Sequence record reported by the local genomic context database.
Genomic interval169 088-170 485 nt1 398 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span169 088-170 485 ntGCF_028596765::NZ_JAQRIR010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596765::NZ_JAQRIR010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span169 088-170 485 nt1 398 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
169 088 nt170 485 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PSL66_RS00820GCF_028596765#PSL66_RS00820
HKClassicCurrent focus
169 088-170 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1772968
Simplified PFAM architecture for HKOC_1772968
PFAM domain coverage: 167 / 465 aa (35.9%)
1 aa465 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-306] | HATPase_c[360-464]
- Domain count: 2
- Matched identifier: HKOC_1772968
- Positioned domains: HisKA 245-306 ; HATPase_c 360-464
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596765
AssemblyASM2859676v1 · Contighaploid
Genome composition3 947 610 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key