1 HisKA#1
309-375 aa · 67 aa · 12.6% of protein
Raw token
HisKA:309:0.000000000000009:375:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL48_RS00580
Histidine kinase, Classic
Clostridioides difficile · GCF_028596735
ClassHKTypeClassicLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596735#PSL48_RS00580Stable P2CS identifier used across views.
GenomeGCF_028596735Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 530 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
428-513 aa · 86 aa · 16.2% of protein
Raw token
HATPase_c:428:0.0000000975:513:90:109- Raw architecture: HisKA:309:0.000000000000009:375:67:64#HATPase_c:428:0.0000000975:513:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596735::NZ_JAQRIS010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129499-131776Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL48_00580RefSeq proteinWP_003423136.1
Context group ID
GCF_028596735::NZ_JAQRIS010000001.1::G00011Context members
PSL48_RS00575PSL48_RS00580
Partner locus tags
PSL48_RS00575PSL48_RS00580
Partner old locus tags
PSL48_00575PSL48_00580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003423136.1Primary protein accession used for annex mappings.
UniProt accessionD5Q2Z1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q2Z1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL48_RS00580Primary locus identifier stored in the genes table.
Old locus tagPSL48_00580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIS010000001.1Sequence record reported by the local genomic context database.
Genomic interval130 184-131 776 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 499-131 776 ntGCF_028596735::NZ_JAQRIS010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596735::NZ_JAQRIS010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span129 499-131 776 nt2 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 499 nt131 776 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSL48_RS00575GCF_028596735#PSL48_RS00575
RROmpR
129 499-130 215 nt · Forward (+)
PSL48_RS00580GCF_028596735#PSL48_RS00580
HKClassicCurrent focus
130 184-131 776 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0211330Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1355523
Simplified PFAM architecture for HKOC_1355523
PFAM domain coverage: 194 / 530 aa (36.6%)
1 aa530 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[255-297] | HisKA[309-375] | HATPase_c[427-510]
- Domain count: 3
- Matched identifier: HKOC_1355523
- Positioned domains: HAMP 255-297 ; HisKA 309-375 ; HATPase_c 427-510
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0211330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596735
AssemblyASM2859673v1 · Contighaploid
Genome composition3 891 000 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key