1 MASE3#1
43-257 aa · 215 aa · 23.6% of protein
Raw token
MASE3:43:0.0000486:257:227:226P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL50_RS01185
Histidine kinase, Classic
Clostridioides difficile · GCF_028596655
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028596655#PSL50_RS01185Stable P2CS identifier used across views.
GenomeGCF_028596655Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
MASE3PAS_9HisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage499 / 912 aa (54.7%)Merged over positioned domains only.
Domain description1 MASE3,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa912 aa
Domain-by-domain annotation4 items
2 PAS_9#2
529-629 aa · 101 aa · 11.1% of protein
Raw token
PAS_9:529:0.0000499:629:101:1023 HisKA#3
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000000000987:726:72:644 HATPase_c#4
773-883 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:773:1.5e-30:883:111:109- Raw architecture: MASE3:43:0.0000486:257:227:226#PAS_9:529:0.0000499:629:101:102#HisKA:655:0.00000000000000987:726:72:64#HATPase_c:773:1.5e-30:883:111:109
- Domain description: 1 MASE3,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028596655::NZ_JAQRIJ010000001.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span274791-277529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL50_01200RefSeq proteinWP_273585536.1
Context group ID
GCF_028596655::NZ_JAQRIJ010000001.1::G00012Context members
PSL50_RS01185
Partner locus tags
PSL50_RS01185
Partner old locus tags
PSL50_01200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_273585536.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL50_RS01185Primary locus identifier stored in the genes table.
Old locus tagPSL50_01200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval274 791-277 529 nt2 739 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span274 791-277 529 ntGCF_028596655::NZ_JAQRIJ010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596655::NZ_JAQRIJ010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span274 791-277 529 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 791 nt277 529 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PSL50_RS01185GCF_028596655#PSL50_RS01185
HKClassicCurrent focus
274 791-277 529 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028596655#PSL50_RS01185The current gene is the representative for this cluster.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0388793
Simplified PFAM architecture for HKOC_0388793
PFAM domain coverage: 341 / 912 aa (37.4%)
1 aa912 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-356] | PAS_9[529-632] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 4
- Matched identifier: HKOC_0388793
- Positioned domains: PAS_8 303-356 ; PAS_9 529-632 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_028596655#PSL50_RS01185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596655
AssemblyASM2859665v1 · Contighaploid
Genome composition4 084 552 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key