1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.0000201:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM00_RS07120
Histidine kinase, Classic
Clostridioides difficile · GCF_028596635
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596635#PSM00_RS07120Stable P2CS identifier used across views.
GenomeGCF_028596635Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 467 aa (51.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.6% of protein
Raw token
HisKA:245:0.0000000000000228:312:68:643 HATPase_c#3
359-464 aa · 106 aa · 22.7% of protein
Raw token
HATPase_c:359:8.85e-25:464:107:109- Raw architecture: HAMP:166:0.0000201:232:69:69#HisKA:245:0.0000000000000228:312:68:64#HATPase_c:359:8.85e-25:464:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596635::NZ_JAQRIL010000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span155477-157609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM00_07120RefSeq proteinWP_003420354.1
Context group ID
GCF_028596635::NZ_JAQRIL010000004.1::G00038Context members
PSM00_RS07115PSM00_RS07120
Partner locus tags
PSM00_RS07115PSM00_RS07120
Partner old locus tags
PSM00_07115PSM00_07120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003420354.1Primary protein accession used for annex mappings.
UniProt accessionD5Q6Z1Primary UniProt accession resolved in the annex database.
UniProt IDD5Q6Z1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM00_RS07120Primary locus identifier stored in the genes table.
Old locus tagPSM00_07120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIL010000004.1Sequence record reported by the local genomic context database.
Genomic interval156 206-157 609 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 477-157 609 ntGCF_028596635::NZ_JAQRIL010000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596635::NZ_JAQRIL010000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIL010000004.1All displayed genes belong to this local TCS context.
Neighborhood span155 477-157 609 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 477 nt157 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM00_RS07115GCF_028596635#PSM00_RS07115
RROmpR
155 477-156 202 nt · Forward (+)
PSM00_RS07120GCF_028596635#PSM00_RS07120
HKClassicCurrent focus
156 206-157 609 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0208280Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747751
Simplified PFAM architecture for HKOC_1747751
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747751
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0208280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596635
AssemblyASM2859663v1 · Contighaploid
Genome composition4 042 230 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key