1 HisKA#1
87-150 aa · 64 aa · 21.0% of protein
Raw token
HisKA:87:0.0000000518:150:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL78_RS14375
Histidine kinase, Classic
Clostridioides difficile · GCF_028596515
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596515#PSL78_RS14375Stable P2CS identifier used across views.
GenomeGCF_028596515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 305 aa (56.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
197-304 aa · 108 aa · 35.4% of protein
Raw token
HATPase_c:197:2.4e-27:304:108:109- Raw architecture: HisKA:87:0.0000000518:150:64:64#HATPase_c:197:2.4e-27:304:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596515::NZ_JAQRIF010000009.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71508-73126Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL78_14380RefSeq proteinWP_016729487.1
Context group ID
GCF_028596515::NZ_JAQRIF010000009.1::G00061Context members
PSL78_RS14375PSL78_RS14380
Partner locus tags
PSL78_RS14375PSL78_RS14380
Partner old locus tags
PSL78_14380PSL78_14385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016729487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL78_RS14375Primary locus identifier stored in the genes table.
Old locus tagPSL78_14380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIF010000009.1Sequence record reported by the local genomic context database.
Genomic interval71 508-72 425 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 508-73 126 ntGCF_028596515::NZ_JAQRIF010000009.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596515::NZ_JAQRIF010000009.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIF010000009.1All displayed genes belong to this local TCS context.
Neighborhood span71 508-73 126 nt1 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 508 nt73 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSL78_RS14375GCF_028596515#PSL78_RS14375
HKClassicCurrent focus
71 508-72 425 nt · Reverse (-)
PSL78_RS14380GCF_028596515#PSL78_RS14380
RROmpR
72 422-73 126 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0116830Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882042
Simplified PFAM architecture for HKOC_2882042
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-150] | HATPase_c[197-303]
- Domain count: 2
- Matched identifier: HKOC_2882042
- Positioned domains: HisKA 87-150 ; HATPase_c 197-303
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0116830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596515
AssemblyASM2859651v1 · Contighaploid
Genome composition4 313 127 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 111 · HK 53 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key