1 HisKA#1
209-274 aa · 66 aa · 15.4% of protein
Raw token
HisKA:209:0.00000000000000244:274:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL78_RS10820
Histidine kinase, Classic
Clostridioides difficile · GCF_028596515
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596515#PSL78_RS10820Stable P2CS identifier used across views.
GenomeGCF_028596515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 429 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
319-429 aa · 111 aa · 25.9% of protein
Raw token
HATPase_c:319:7.23e-22:429:111:109- Raw architecture: HisKA:209:0.00000000000000244:274:66:64#HATPase_c:319:7.23e-22:429:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596515::NZ_JAQRIF010000005.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163531-165545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL78_10825RefSeq proteinWP_273602580.1
Context group ID
GCF_028596515::NZ_JAQRIF010000005.1::G00053Context members
PSL78_RS10815PSL78_RS10820
Partner locus tags
PSL78_RS10815PSL78_RS10820
Partner old locus tags
PSL78_10820PSL78_10825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_273602580.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL78_RS10820Primary locus identifier stored in the genes table.
Old locus tagPSL78_10825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIF010000005.1Sequence record reported by the local genomic context database.
Genomic interval164 256-165 545 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 531-165 545 ntGCF_028596515::NZ_JAQRIF010000005.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596515::NZ_JAQRIF010000005.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIF010000005.1All displayed genes belong to this local TCS context.
Neighborhood span163 531-165 545 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 531 nt165 545 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSL78_RS10815GCF_028596515#PSL78_RS10815
RROmpR
163 531-164 190 nt · Forward (+)
PSL78_RS10820GCF_028596515#PSL78_RS10820
HKClassicCurrent focus
164 256-165 545 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028596515#PSL78_RS10820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2184696
Simplified PFAM architecture for HKOC_2184696
PFAM domain coverage: 177 / 429 aa (41.3%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-274] | HATPase_c[319-429]
- Domain count: 2
- Matched identifier: HKOC_2184696
- Positioned domains: HisKA 209-274 ; HATPase_c 319-429
Cluster members and taxonomy
Representative gene: GCF_028596515#PSL78_RS10820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596515
AssemblyASM2859651v1 · Contighaploid
Genome composition4 313 127 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 111 · HK 53 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key