1 PAS_9#1
529-629 aa · 101 aa · 11.1% of protein
Raw token
PAS_9:529:0.000076:629:101:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL78_RS03355
Histidine kinase, Classic
Clostridioides difficile · GCF_028596515
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028596515#PSL78_RS03355Stable P2CS identifier used across views.
GenomeGCF_028596515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 912 aa (31.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa912 aa
Domain-by-domain annotation3 items
2 HisKA#2
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000000000643:726:72:643 HATPase_c#3
773-883 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:773:3.33e-31:883:111:109- Raw architecture: PAS_9:529:0.000076:629:101:102#HisKA:655:0.00000000000000643:726:72:64#HATPase_c:773:3.33e-31:883:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028596515::NZ_JAQRIF010000002.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span119277-122015Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL78_03360RefSeq proteinWP_273602361.1
Context group ID
GCF_028596515::NZ_JAQRIF010000002.1::G00032Context members
PSL78_RS03355
Partner locus tags
PSL78_RS03355
Partner old locus tags
PSL78_03360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_273602361.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL78_RS03355Primary locus identifier stored in the genes table.
Old locus tagPSL78_03360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIF010000002.1Sequence record reported by the local genomic context database.
Genomic interval119 277-122 015 nt2 739 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 277-122 015 ntGCF_028596515::NZ_JAQRIF010000002.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596515::NZ_JAQRIF010000002.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIF010000002.1All displayed genes belong to this local TCS context.
Neighborhood span119 277-122 015 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 277 nt122 015 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PSL78_RS03355GCF_028596515#PSL78_RS03355
HKClassicCurrent focus
119 277-122 015 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028596515#PSL78_RS03355The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0388792
Simplified PFAM architecture for HKOC_0388792
PFAM domain coverage: 287 / 912 aa (31.5%)
1 aa912 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[529-632] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 3
- Matched identifier: HKOC_0388792
- Positioned domains: PAS_9 529-632 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_028596515#PSL78_RS03355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596515
AssemblyASM2859651v1 · Contighaploid
Genome composition4 313 127 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 111 · HK 53 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key