1 Response_reg#1
4-116 aa · 113 aa · 67.3% of protein
Raw token
Response_reg:4:3.97e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM30_RS18560
Response regulator, CheY family
Clostridioides difficile · GCF_028596485
ClassRRTypeCheYLength168 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028596485#PSM30_RS18560Stable P2CS identifier used across views.
GenomeGCF_028596485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length168 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 168 aa (67.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa168 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.97e-29:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028596485::NZ_JAQRID010000025.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-504Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM30_18610RefSeq proteinWP_273601603.1
Context group ID
GCF_028596485::NZ_JAQRID010000025.1::G00033Context members
PSM30_RS18560
Partner locus tags
PSM30_RS18560
Partner old locus tags
PSM30_18610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_273601603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM30_RS18560Primary locus identifier stored in the genes table.
Old locus tagPSM30_18610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRID010000025.1Sequence record reported by the local genomic context database.
Genomic interval1-504 nt504 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-504 ntGCF_028596485::NZ_JAQRID010000025.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596485::NZ_JAQRID010000025.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRID010000025.1All displayed genes belong to this local TCS context.
Neighborhood span1-504 nt504 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt504 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PSM30_RS18560GCF_028596485#PSM30_RS18560
RRCheYCurrent focus
1-504 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028596485#PSM30_RS18560The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2199971
Simplified PFAM architecture for RROC_2199971
PFAM domain coverage: 113 / 168 aa (67.3%)
1 aa168 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-116]
- Domain count: 1
- Matched identifier: RROC_2199971
- Positioned domains: Response_reg 4-116
Cluster members and taxonomy
Representative gene: GCF_028596485#PSM30_RS18560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596485
AssemblyASM2859648v1 · Contighaploid
Genome composition4 079 728 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key