1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:2.34e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM54_RS05990
Response regulator OmpR family
Clostridioides difficile · GCF_028596425
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596425#PSM54_RS05990Stable P2CS identifier used across views.
GenomeGCF_028596425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:2.35e-30:219:77:77- Raw architecture: Response_reg:4:2.34e-34:113:111:111#Trans_reg_C:146:2.35e-30:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596425::NZ_JAQRIB010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73484-75282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM54_05990RefSeq proteinWP_021372239.1
Context group ID
GCF_028596425::NZ_JAQRIB010000002.1::G00033Context members
PSM54_RS05990PSM54_RS05995
Partner locus tags
PSM54_RS05990PSM54_RS05995
Partner old locus tags
PSM54_05990PSM54_05995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021372239.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM54_RS05990Primary locus identifier stored in the genes table.
Old locus tagPSM54_05990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIB010000002.1Sequence record reported by the local genomic context database.
Genomic interval73 484-74 155 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 484-75 282 ntGCF_028596425::NZ_JAQRIB010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596425::NZ_JAQRIB010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIB010000002.1All displayed genes belong to this local TCS context.
Neighborhood span73 484-75 282 nt1 799 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 484 nt75 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM54_RS05990GCF_028596425#PSM54_RS05990
RROmpRCurrent focus
73 484-74 155 nt · Forward (+)
PSM54_RS05995GCF_028596425#PSM54_RS05995
HKClassic
74 152-75 282 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449065#QCK_RS18170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589870
Simplified PFAM architecture for RROC_1589870
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1589870
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000449065#QCK_RS18170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596425
AssemblyASM2859642v1 · Contighaploid
Genome composition4 468 939 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key