1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.000000299:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM54_RS01585
Histidine kinase, Classic
Clostridioides difficile · GCF_028596425
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596425#PSM54_RS01585Stable P2CS identifier used across views.
GenomeGCF_028596425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:4.45e-24:341:101:109- Raw architecture: HisKA:124:0.000000299:189:66:64#HATPase_c:241:4.45e-24:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596425::NZ_JAQRIB010000001.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span334401-336108Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM54_01585RefSeq proteinWP_021370409.1
Context group ID
GCF_028596425::NZ_JAQRIB010000001.1::G00021Context members
PSM54_RS01580PSM54_RS01585
Partner locus tags
PSM54_RS01580PSM54_RS01585
Partner old locus tags
PSM54_01580PSM54_01585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021370409.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM54_RS01585Primary locus identifier stored in the genes table.
Old locus tagPSM54_01585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIB010000001.1Sequence record reported by the local genomic context database.
Genomic interval335 077-336 108 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span334 401-336 108 ntGCF_028596425::NZ_JAQRIB010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596425::NZ_JAQRIB010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span334 401-336 108 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
334 401 nt336 108 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM54_RS01580GCF_028596425#PSM54_RS01580
RROmpR
334 401-335 087 nt · Forward (+)
PSM54_RS01585GCF_028596425#PSM54_RS01585
HKClassicCurrent focus
335 077-336 108 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449025#QCG_RS10570Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827963
Simplified PFAM architecture for HKOC_2827963
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827963
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000449025#QCG_RS10570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596425
AssemblyASM2859642v1 · Contighaploid
Genome composition4 468 939 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key