1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:2.16e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM54_RS01310
Response regulator, AmiR_NasR family
Clostridioides difficile · GCF_028596425
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596425#PSM54_RS01310Stable P2CS identifier used across views.
GenomeGCF_028596425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:1.84e-19:186:49:49- Raw architecture: Response_reg:5:2.16e-31:104:100:111#ANTAR:138:1.84e-19:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596425::NZ_JAQRIB010000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span281308-283285Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM54_01310RefSeq proteinWP_021372050.1
Context group ID
GCF_028596425::NZ_JAQRIB010000001.1::G00018Context members
PSM54_RS01310PSM54_RS01315
Partner locus tags
PSM54_RS01310PSM54_RS01315
Partner old locus tags
PSM54_01310PSM54_01315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021372050.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM54_RS01310Primary locus identifier stored in the genes table.
Old locus tagPSM54_01310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRIB010000001.1Sequence record reported by the local genomic context database.
Genomic interval281 308-281 883 nt576 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span281 308-283 285 ntGCF_028596425::NZ_JAQRIB010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596425::NZ_JAQRIB010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRIB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span281 308-283 285 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
281 308 nt283 285 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM54_RS01310GCF_028596425#PSM54_RS01310
RRAmiR_NasRCurrent focus
281 308-281 883 nt · Forward (+)
PSM54_RS01315GCF_028596425#PSM54_RS01315
HKClassic
281 876-283 285 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449065#QCK_RS11415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2167940
Simplified PFAM architecture for RROC_2167940
PFAM domain coverage: 164 / 191 aa (85.9%)
1 aa191 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-115] | ANTAR[134-186]
- Domain count: 2
- Matched identifier: RROC_2167940
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; ANTAR 134-186 ; ANTAR 134-186
Cluster members and taxonomy
Representative gene: GCF_000449065#QCK_RS11415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596425
AssemblyASM2859642v1 · Contighaploid
Genome composition4 468 939 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key