1 HisKA_3#1
188-253 aa · 66 aa · 17.1% of protein
Raw token
HisKA_3:188:5.6e-20:253:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSM41_RS12475
Histidine kinase, Classic
Clostridioides difficile · GCF_028596415
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028596415#PSM41_RS12475Stable P2CS identifier used across views.
GenomeGCF_028596415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 387 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-378 aa · 85 aa · 22.0% of protein
Raw token
HATPase_c:294:0.0000000002:378:104:109- Raw architecture: HisKA_3:188:5.6e-20:253:67:68#HATPase_c:294:0.0000000002:378:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028596415::NZ_JAQRHV010000006.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span228986-230789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSM41_12480RefSeq proteinWP_021370252.1
Context group ID
GCF_028596415::NZ_JAQRHV010000006.1::G00055Context members
PSM41_RS12470PSM41_RS12475
Partner locus tags
PSM41_RS12470PSM41_RS12475
Partner old locus tags
PSM41_12475PSM41_12480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021370252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSM41_RS12475Primary locus identifier stored in the genes table.
Old locus tagPSM41_12480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRHV010000006.1Sequence record reported by the local genomic context database.
Genomic interval229 626-230 789 nt1 164 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span228 986-230 789 ntGCF_028596415::NZ_JAQRHV010000006.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596415::NZ_JAQRHV010000006.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRHV010000006.1All displayed genes belong to this local TCS context.
Neighborhood span228 986-230 789 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
228 986 nt230 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PSM41_RS12470GCF_028596415#PSM41_RS12470
RRNarL
228 986-229 633 nt · Reverse (-)
PSM41_RS12475GCF_028596415#PSM41_RS12475
HKClassicCurrent focus
229 626-230 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449025#QCG_RS07250Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550382
Simplified PFAM architecture for HKOC_2550382
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550382
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000449025#QCG_RS07250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596415
AssemblyASM2859641v1 · Contighaploid
Genome composition4 361 578 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 47 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key