1 Response_reg#1
22-108 aa · 87 aa · 44.8% of protein
Raw token
Response_reg:22:0.00000000000000305:108:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL54_RS13020
Response regulator NarL family
Clostridioides difficile · GCF_028596365
ClassRRTypeNarLLength194 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028596365#PSL54_RS13020Stable P2CS identifier used across views.
GenomeGCF_028596365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 194 aa (74.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
128-184 aa · 57 aa · 29.4% of protein
Raw token
HTH_LUXR:128:9.34e-18:184:57:58- Raw architecture: Response_reg:22:0.00000000000000305:108:87:111#HTH_LUXR:128:9.34e-18:184:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028596365::NZ_JAQRHW010000009.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span154349-154933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL54_13060RefSeq proteinWP_330360710.1
Context group ID
GCF_028596365::NZ_JAQRHW010000009.1::G00055Context members
PSL54_RS13020
Partner locus tags
PSL54_RS13020
Partner old locus tags
PSL54_13060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330360710.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL54_RS13020Primary locus identifier stored in the genes table.
Old locus tagPSL54_13060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRHW010000009.1Sequence record reported by the local genomic context database.
Genomic interval154 349-154 933 nt585 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 349-154 933 ntGCF_028596365::NZ_JAQRHW010000009.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596365::NZ_JAQRHW010000009.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRHW010000009.1All displayed genes belong to this local TCS context.
Neighborhood span154 349-154 933 nt585 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 349 nt154 933 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PSL54_RS13020GCF_028596365#PSL54_RS13020
RRNarLCurrent focus
154 349-154 933 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS14820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081110
Simplified PFAM architecture for RROC_2081110
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2081110
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; GerE 142-196 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS14820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596365
AssemblyASM2859636v1 · Contighaploid
Genome composition3 966 394 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 47 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key