1 HisKA#1
293-359 aa · 67 aa · 8.4% of protein
Raw token
HisKA:293:5.29e-18:359:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PSL93_RS16760
Histidine kinase, Hybrid
Clostridioides difficile · GCF_028596355
ClassHKTypeHybridLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028596355#PSL93_RS16760Stable P2CS identifier used across views.
GenomeGCF_028596355Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage409 / 801 aa (51.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
407-525 aa · 119 aa · 14.9% of protein
Raw token
HATPase_c:407:5.14e-25:525:120:1093 Response_reg#3
541-645 aa · 105 aa · 13.1% of protein
Raw token
Response_reg:541:1.19e-21:645:105:1114 Response_reg#4
680-797 aa · 118 aa · 14.7% of protein
Raw token
Response_reg:680:9.7e-27:797:118:111- Raw architecture: HisKA:293:5.29e-18:359:67:64#HATPase_c:407:5.14e-25:525:120:109#Response_reg:541:1.19e-21:645:105:111#Response_reg:680:9.7e-27:797:118:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028596355::NZ_JAQRHZ010000013.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18408-20813Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPSL93_16715RefSeq proteinWP_330675005.1
Context group ID
GCF_028596355::NZ_JAQRHZ010000013.1::G00007Context members
PSL93_RS16760
Partner locus tags
PSL93_RS16760
Partner old locus tags
PSL93_16715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330675005.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPSL93_RS16760Primary locus identifier stored in the genes table.
Old locus tagPSL93_16715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQRHZ010000013.1Sequence record reported by the local genomic context database.
Genomic interval18 408-20 813 nt2 406 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 408-20 813 ntGCF_028596355::NZ_JAQRHZ010000013.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028596355::NZ_JAQRHZ010000013.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQRHZ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span18 408-20 813 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 408 nt20 813 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PSL93_RS16760GCF_028596355#PSL93_RS16760
HKHybridCurrent focus
18 408-20 813 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028596355#PSL93_RS16760The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0555584
Simplified PFAM architecture for HKOC_0555584
PFAM domain coverage: 413 / 801 aa (51.6%)
1 aa801 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[293-359] | HATPase_c[407-524] | Response_reg[541-651] | Response_reg[680-796]
- Domain count: 4
- Matched identifier: HKOC_0555584
- Positioned domains: HisKA 293-359 ; HATPase_c 407-524 ; Response_reg 541-651 ; Response_reg 680-796
Cluster members and taxonomy
Representative gene: GCF_028596355#PSL93_RS16760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_028596355
AssemblyASM2859635v1 · Contighaploid
Genome composition4 362 336 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key