1 Response_reg#1
5-114 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:5:6.59e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGN31_RS11580
Response regulator OmpR family
Enterococcus faecalis · GCF_028341575
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028341575#PGN31_RS11580Stable P2CS identifier used across views.
GenomeGCF_028341575Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.7% of protein
Raw token
Trans_reg_C:145:1.95e-29:216:77:77- Raw architecture: Response_reg:5:6.59e-32:114:111:111#Trans_reg_C:145:1.95e-29:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028341575::NZ_JAQIJU010000015.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48770-50775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPGN31_11580RefSeq proteinWP_002368697.1
Context group ID
GCF_028341575::NZ_JAQIJU010000015.1::G00006Context members
PGN31_RS11580PGN31_RS11585
Partner locus tags
PGN31_RS11580PGN31_RS11585
Partner old locus tags
PGN31_11580PGN31_11585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002368697.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX2KR45Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX2KR45_ENTFLDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGN31_RS11580Primary locus identifier stored in the genes table.
Old locus tagPGN31_11580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQIJU010000015.1Sequence record reported by the local genomic context database.
Genomic interval48 770-49 432 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 770-50 775 ntGCF_028341575::NZ_JAQIJU010000015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028341575::NZ_JAQIJU010000015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQIJU010000015.1All displayed genes belong to this local TCS context.
Neighborhood span48 770-50 775 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 770 nt50 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PGN31_RS11580GCF_028341575#PGN31_RS11580
RROmpRCurrent focus
48 770-49 432 nt · Forward (+)
PGN31_RS11585GCF_028341575#PGN31_RS11585
HKClassic
49 432-50 775 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS10965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1722616
Simplified PFAM architecture for RROC_1722616
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1722616
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS10965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_028341575
AssemblyASM2834157v1 · Contighaploid
Genome composition3 185 843 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key