1 Response_reg#1
3-114 aa · 112 aa · 47.9% of protein
Raw token
Response_reg:3:7.67e-23:114:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PGN38_RS00965
Response regulator LytTR family
Enterococcus faecalis · GCF_028341555
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028341555#PGN38_RS00965Stable P2CS identifier used across views.
GenomeGCF_028341555Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 234 aa (85.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
135-221 aa · 87 aa · 37.2% of protein
Raw token
LytTR:135:2.56e-23:221:93:98- Raw architecture: Response_reg:3:7.67e-23:114:114:111#LytTR:135:2.56e-23:221:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028341555::NZ_JAQIJW010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span207561-208265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPGN38_00965RefSeq proteinWP_002399975.1
Context group ID
GCF_028341555::NZ_JAQIJW010000001.1::G00001Context members
PGN38_RS00965
Partner locus tags
PGN38_RS00965
Partner old locus tags
PGN38_00965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002399975.1Primary protein accession used for annex mappings.
UniProt accessionQ835P0Primary UniProt accession resolved in the annex database.
UniProt IDQ835P0_ENTFADisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPGN38_RS00965Primary locus identifier stored in the genes table.
Old locus tagPGN38_00965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQIJW010000001.1Sequence record reported by the local genomic context database.
Genomic interval207 561-208 265 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span207 561-208 265 ntGCF_028341555::NZ_JAQIJW010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028341555::NZ_JAQIJW010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQIJW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span207 561-208 265 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
207 561 nt208 265 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PGN38_RS00965GCF_028341555#PGN38_RS00965
RRLytTRCurrent focus
207 561-208 265 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS06455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047066
Simplified PFAM architecture for RROC_1047066
PFAM domain coverage: 198 / 234 aa (84.6%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[135-221]
- Domain count: 2
- Matched identifier: RROC_1047066
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; LytTR 135-221 ; LytTR 135-221
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS06455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_028341555
AssemblyASM2834155v1 · Contighaploid
Genome composition3 193 151 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 33 · HK 15 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key