1 Response_reg#1
3-111 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:3:0.0000000000102:111:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNX04_RS19285
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_028327405
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028327405#PNX04_RS19285Stable P2CS identifier used across views.
GenomeGCF_028327405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-223 aa · 79 aa · 33.2% of protein
Raw token
LytTR:145:1.85e-17:223:84:98- Raw architecture: Response_reg:3:0.0000000000102:111:113:111#LytTR:145:1.85e-17:223:84:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028327405::NZ_JAQMLH010000111.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span690-1406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNX04_19295RefSeq proteinWP_118044250.1
Context group ID
GCF_028327405::NZ_JAQMLH010000111.1::G00002Context members
PNX04_RS19285
Partner locus tags
PNX04_RS19285
Partner old locus tags
PNX04_19295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118044250.1Primary protein accession used for annex mappings.
UniProt accessionA0A414CVS8Primary UniProt accession resolved in the annex database.
UniProt IDA0A414CVS8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNX04_RS19285Primary locus identifier stored in the genes table.
Old locus tagPNX04_19295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLH010000111.1Sequence record reported by the local genomic context database.
Genomic interval690-1 406 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span690-1 406 ntGCF_028327405::NZ_JAQMLH010000111.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327405::NZ_JAQMLH010000111.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLH010000111.1All displayed genes belong to this local TCS context.
Neighborhood span690-1 406 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
690 nt1 406 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PNX04_RS19285GCF_028327405#PNX04_RS19285
RRLytTRCurrent focus
690-1 406 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468635#DW812_RS18050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940430
Simplified PFAM architecture for RROC_0940430
PFAM domain coverage: 171 / 238 aa (71.8%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[26-113] | LytTR[144-226]
- Domain count: 2
- Matched identifier: RROC_0940430
- Positioned domains: Response_reg 26-113 ; Response_reg 26-113 ; LytTR 144-226 ; LytTR 144-226
Cluster members and taxonomy
Representative gene: GCF_003468635#DW812_RS18050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327405
AssemblyASM2832740v1 · Scaffoldhaploid
Genome composition3 825 911 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key