1 Response_reg#1
3-117 aa · 115 aa · 56.9% of protein
Raw token
Response_reg:3:4.4e-16:117:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNX04_RS16930
Response regulator NarL family
Mediterraneibacter gnavus · GCF_028327405
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028327405#PNX04_RS16930Stable P2CS identifier used across views.
GenomeGCF_028327405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 202 aa (85.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
135-191 aa · 57 aa · 28.2% of protein
Raw token
HTH_LUXR:135:1.94e-20:191:57:58- Raw architecture: Response_reg:3:4.4e-16:117:117:111#HTH_LUXR:135:1.94e-20:191:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028327405::NZ_JAQMLH010000050.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span509-1117Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNX04_16940RefSeq proteinWP_242953372.1
Context group ID
GCF_028327405::NZ_JAQMLH010000050.1::G00035Context members
PNX04_RS16930
Partner locus tags
PNX04_RS16930
Partner old locus tags
PNX04_16940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242953372.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNX04_RS16930Primary locus identifier stored in the genes table.
Old locus tagPNX04_16940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLH010000050.1Sequence record reported by the local genomic context database.
Genomic interval509-1 117 nt609 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span509-1 117 ntGCF_028327405::NZ_JAQMLH010000050.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327405::NZ_JAQMLH010000050.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLH010000050.1All displayed genes belong to this local TCS context.
Neighborhood span509-1 117 nt609 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
509 nt1 117 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PNX04_RS16930GCF_028327405#PNX04_RS16930
RRNarLCurrent focus
509-1 117 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865345#CDL23_RS06750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2116200
Simplified PFAM architecture for RROC_2116200
PFAM domain coverage: 169 / 202 aa (83.7%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-116] | GerE[137-191]
- Domain count: 2
- Matched identifier: RROC_2116200
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; GerE 137-191 ; GerE 137-191
Cluster members and taxonomy
Representative gene: GCF_002865345#CDL23_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327405
AssemblyASM2832740v1 · Scaffoldhaploid
Genome composition3 825 911 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key