1 Response_reg#1
7-115 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:7:3.62e-25:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNX04_RS16440
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_028327405
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327405#PNX04_RS16440Stable P2CS identifier used across views.
GenomeGCF_028327405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 223 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-220 aa · 69 aa · 30.9% of protein
Raw token
Trans_reg_C:152:1.96e-20:220:71:77- Raw architecture: Response_reg:7:3.62e-25:115:113:111#Trans_reg_C:152:1.96e-20:220:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327405::NZ_JAQMLH010000045.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6231-7810Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNX04_16450RefSeq proteinWP_009319962.1
Context group ID
GCF_028327405::NZ_JAQMLH010000045.1::G00027Context members
PNX04_RS16440PNX04_RS16445
Partner locus tags
PNX04_RS16440PNX04_RS16445
Partner old locus tags
PNX04_16450PNX04_16455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009319962.1Primary protein accession used for annex mappings.
UniProt accessionA0A174HJS9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174HJS9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNX04_RS16440Primary locus identifier stored in the genes table.
Old locus tagPNX04_16450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLH010000045.1Sequence record reported by the local genomic context database.
Genomic interval6 231-6 893 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 231-7 810 ntGCF_028327405::NZ_JAQMLH010000045.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327405::NZ_JAQMLH010000045.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLH010000045.1All displayed genes belong to this local TCS context.
Neighborhood span6 231-7 810 nt1 580 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 231 nt7 810 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNX04_RS16440GCF_028327405#PNX04_RS16440
RROmpRCurrent focus
6 231-6 893 nt · Forward (+)
PNX04_RS16445GCF_028327405#PNX04_RS16445
HKClassic
6 884-7 810 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404835#ARA33_RS09865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1593178
Simplified PFAM architecture for RROC_1593178
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[150-221]
- Domain count: 2
- Matched identifier: RROC_1593178
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 150-221 ; Trans_reg_C 150-221
Cluster members and taxonomy
Representative gene: GCF_001404835#ARA33_RS09865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327405
AssemblyASM2832740v1 · Scaffoldhaploid
Genome composition3 825 911 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key