1 HisKA#1
199-263 aa · 65 aa · 15.3% of protein
Raw token
HisKA:199:0.0000000000000146:263:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNX04_RS08940
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327405
ClassHKTypeClassicLength424 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028327405#PNX04_RS08940Stable P2CS identifier used across views.
GenomeGCF_028327405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length424 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 424 aa (37.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa424 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
310-403 aa · 94 aa · 22.2% of protein
Raw token
HATPase_c:310:0.0000000000000122:403:95:109- Raw architecture: HisKA:199:0.0000000000000146:263:65:64#HATPase_c:310:0.0000000000000122:403:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028327405::NZ_JAQMLH010000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35868-37821Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNX04_08945RefSeq proteinWP_272111929.1
Context group ID
GCF_028327405::NZ_JAQMLH010000011.1::G00004Context members
PNX04_RS08935PNX04_RS08940
Partner locus tags
PNX04_RS08935PNX04_RS08940
Partner old locus tags
PNX04_08940PNX04_08945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272111929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNX04_RS08940Primary locus identifier stored in the genes table.
Old locus tagPNX04_08945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLH010000011.1Sequence record reported by the local genomic context database.
Genomic interval36 547-37 821 nt1 275 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 868-37 821 ntGCF_028327405::NZ_JAQMLH010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327405::NZ_JAQMLH010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLH010000011.1All displayed genes belong to this local TCS context.
Neighborhood span35 868-37 821 nt1 954 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 868 nt37 821 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PNX04_RS08935GCF_028327405#PNX04_RS08935
RROmpR
35 868-36 575 nt · Forward (+)
PNX04_RS08940GCF_028327405#PNX04_RS08940
HKClassicCurrent focus
36 547-37 821 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028327405#PNX04_RS08940The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2229980
Simplified PFAM architecture for HKOC_2229980
PFAM domain coverage: 156 / 424 aa (36.8%)
1 aa424 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[200-263] | HATPase_c[312-403]
- Domain count: 2
- Matched identifier: HKOC_2229980
- Positioned domains: HisKA 200-263 ; HATPase_c 312-403
Cluster members and taxonomy
Representative gene: GCF_028327405#PNX04_RS08940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327405
AssemblyASM2832740v1 · Scaffoldhaploid
Genome composition3 825 911 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key