1 HisKA#1
77-146 aa · 70 aa · 23.1% of protein
Raw token
HisKA:77:0.000000000000111:146:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PNX04_RS04850
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_028327405
ClassHKTypeClassicLength303 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028327405#PNX04_RS04850Stable P2CS identifier used across views.
GenomeGCF_028327405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length303 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 303 aa (57.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa303 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-296 aa · 105 aa · 34.7% of protein
Raw token
HATPase_c:192:0.00000000000000766:296:110:109- Raw architecture: HisKA:77:0.000000000000111:146:70:64#HATPase_c:192:0.00000000000000766:296:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028327405::NZ_JAQMLH010000004.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span137422-138333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPNX04_04850RefSeq proteinWP_009244053.1
Context group ID
GCF_028327405::NZ_JAQMLH010000004.1::G00032Context members
PNX04_RS04850
Partner locus tags
PNX04_RS04850
Partner old locus tags
PNX04_04850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244053.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NKE6Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NKE6_MEDG5Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPNX04_RS04850Primary locus identifier stored in the genes table.
Old locus tagPNX04_04850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQMLH010000004.1Sequence record reported by the local genomic context database.
Genomic interval137 422-138 333 nt912 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span137 422-138 333 ntGCF_028327405::NZ_JAQMLH010000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028327405::NZ_JAQMLH010000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQMLH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span137 422-138 333 nt912 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 422 nt138 333 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PNX04_RS04850GCF_028327405#PNX04_RS04850
HKClassicCurrent focus
137 422-138 333 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS08350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2883897
Simplified PFAM architecture for HKOC_2883897
PFAM domain coverage: 161 / 303 aa (53.1%)
1 aa303 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-146] | HATPase_c[193-293]
- Domain count: 2
- Matched identifier: HKOC_2883897
- Positioned domains: HisKA 87-146 ; HATPase_c 193-293
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS08350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_028327405
AssemblyASM2832740v1 · Scaffoldhaploid
Genome composition3 825 911 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 43 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key