1 HisKA#1
476-542 aa · 67 aa · 9.6% of protein
Raw token
HisKA:476:1.81e-18:542:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM732_RS01475
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_028317035
ClassHKTypeClassicLength695 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028317035#PM732_RS01475Stable P2CS identifier used across views.
GenomeGCF_028317035Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 695 aa (23.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
589-681 aa · 93 aa · 13.4% of protein
Raw token
HATPase_c:589:0.0000000000683:681:97:109- Raw architecture: HisKA:476:1.81e-18:542:67:64#HATPase_c:589:0.0000000000683:681:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028317035::NZ_JAQLKG010000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67492-70298Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM732_01475RefSeq proteinWP_272020747.1
Context group ID
GCF_028317035::NZ_JAQLKG010000002.1::G00012Context members
PM732_RS01470PM732_RS01475
Partner locus tags
PM732_RS01470PM732_RS01475
Partner old locus tags
PM732_01470PM732_01475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272020747.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM732_RS01475Primary locus identifier stored in the genes table.
Old locus tagPM732_01475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLKG010000002.1Sequence record reported by the local genomic context database.
Genomic interval68 211-70 298 nt2 088 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 492-70 298 ntGCF_028317035::NZ_JAQLKG010000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028317035::NZ_JAQLKG010000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLKG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span67 492-70 298 nt2 807 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 492 nt70 298 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM732_RS01470GCF_028317035#PM732_RS01470
RROmpR
67 492-68 202 nt · Forward (+)
PM732_RS01475GCF_028317035#PM732_RS01475
HKClassicCurrent focus
68 211-70 298 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314945#PM725_RS00380Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0781414
Simplified PFAM architecture for HKOC_0781414
PFAM domain coverage: 160 / 695 aa (23.0%)
1 aa695 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[476-542] | HATPase_c[589-681]
- Domain count: 2
- Matched identifier: HKOC_0781414
- Positioned domains: HisKA 476-542 ; HATPase_c 589-681
Cluster members and taxonomy
Representative gene: GCF_028314945#PM725_RS00380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_028317035
AssemblyASM2831703v1 · Scaffoldhaploid
Genome composition3 503 935 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key