1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:6.01e-34:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM732_RS00710
Response regulator OmpR family
Thomasclavelia ramosa · GCF_028317035
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_028317035#PM732_RS00710Stable P2CS identifier used across views.
GenomeGCF_028317035Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 220 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-218 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:143:2.67e-22:218:77:77- Raw architecture: Response_reg:4:6.01e-34:109:111:111#Trans_reg_C:143:2.67e-22:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_028317035::NZ_JAQLKG010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span149148-150991Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM732_00710RefSeq proteinWP_272020723.1
Context group ID
GCF_028317035::NZ_JAQLKG010000001.1::G00008Context members
PM732_RS00710PM732_RS00715
Partner locus tags
PM732_RS00710PM732_RS00715
Partner old locus tags
PM732_00710PM732_00715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272020723.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM732_RS00710Primary locus identifier stored in the genes table.
Old locus tagPM732_00710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLKG010000001.1Sequence record reported by the local genomic context database.
Genomic interval149 148-149 810 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 148-150 991 ntGCF_028317035::NZ_JAQLKG010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028317035::NZ_JAQLKG010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLKG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span149 148-150 991 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 148 nt150 991 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
PM732_RS00710GCF_028317035#PM732_RS00710
RROmpRCurrent focus
149 148-149 810 nt · Forward (+)
PM732_RS00715GCF_028317035#PM732_RS00715
HKClassic
149 798-150 991 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314945#PM725_RS01455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1746187
Simplified PFAM architecture for RROC_1746187
PFAM domain coverage: 180 / 220 aa (81.8%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1746187
- Positioned domains: Response_reg 4-109 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_028314945#PM725_RS01455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_028317035
AssemblyASM2831703v1 · Scaffoldhaploid
Genome composition3 503 935 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key