1 Response_reg#1
3-98 aa · 96 aa · 41.6% of protein
Raw token
Response_reg:3:0.0000000489:98:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM725_RS08715
Response regulator LytTR family
Thomasclavelia ramosa · GCF_028314945
ClassRRTypeLytTRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028314945#PM725_RS08715Stable P2CS identifier used across views.
GenomeGCF_028314945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 231 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-223 aa · 88 aa · 38.1% of protein
Raw token
LytTR:136:1.29e-21:223:93:98- Raw architecture: Response_reg:3:0.0000000489:98:107:111#LytTR:136:1.29e-21:223:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028314945::NZ_JAQLKH010000015.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73937-74632Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM725_08720RefSeq proteinWP_272021157.1
Context group ID
GCF_028314945::NZ_JAQLKH010000015.1::G00006Context members
PM725_RS08715
Partner locus tags
PM725_RS08715
Partner old locus tags
PM725_08720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_272021157.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM725_RS08715Primary locus identifier stored in the genes table.
Old locus tagPM725_08720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLKH010000015.1Sequence record reported by the local genomic context database.
Genomic interval73 937-74 632 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 937-74 632 ntGCF_028314945::NZ_JAQLKH010000015.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314945::NZ_JAQLKH010000015.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLKH010000015.1All displayed genes belong to this local TCS context.
Neighborhood span73 937-74 632 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 937 nt74 632 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PM725_RS08715GCF_028314945#PM725_RS08715
RRLytTRCurrent focus
73 937-74 632 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028314945#PM725_RS08715The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1182021
Simplified PFAM architecture for RROC_1182021
PFAM domain coverage: 175 / 231 aa (75.8%)
1 aa231 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-89] | LytTR[136-223]
- Domain count: 2
- Matched identifier: RROC_1182021
- Positioned domains: Response_reg 3-89 ; LytTR 136-223
Cluster members and taxonomy
Representative gene: GCF_028314945#PM725_RS08715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_028314945
AssemblyASM2831494v1 · Scaffoldhaploid
Genome composition3 503 162 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key