1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:6.66e-135:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM725_RS02860
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_028314945
ClassHKTypeClassicLength896 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_028314945#PM725_RS02860Stable P2CS identifier used across views.
GenomeGCF_028314945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length896 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 896 aa (43.5%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa896 aa
Domain-by-domain annotation3 items
2 HisKA#2
668-735 aa · 68 aa · 7.6% of protein
Raw token
HisKA:668:0.0000000000024:735:68:643 HATPase_c#3
780-891 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:780:4.76e-29:891:112:109- Raw architecture: KdpD:23:6.66e-135:232:210:210#HisKA:668:0.0000000000024:735:68:64#HATPase_c:780:4.76e-29:891:112:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_028314945::NZ_JAQLKH010000004.1::G00021
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span31277-36851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM725_02860RefSeq proteinWP_270372401.1
Context group ID
GCF_028314945::NZ_JAQLKH010000004.1::G00021Context members
PM725_RS02845PM725_RS02850PM725_RS02855PM725_RS02860
Partner locus tags
PM725_RS02845PM725_RS02850PM725_RS02855PM725_RS02860
Partner old locus tags
PM725_02845PM725_02850PM725_02855PM725_02860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_270372401.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM725_RS02860Primary locus identifier stored in the genes table.
Old locus tagPM725_02860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLKH010000004.1Sequence record reported by the local genomic context database.
Genomic interval34 161-36 851 nt2 691 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 277-36 851 ntGCF_028314945::NZ_JAQLKH010000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314945::NZ_JAQLKH010000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLKH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span31 277-36 851 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 277 nt36 851 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
PM725_RS02845GCF_028314945#PM725_RS02845
RROmpR
31 277-31 960 nt · Reverse (-)
PM725_RS02850GCF_028314945#PM725_RS02850
HKClassic
31 953-33 413 nt · Reverse (-)
PM725_RS02855GCF_028314945#PM725_RS02855
RROmpR
33 458-34 168 nt · Reverse (-)
PM725_RS02860GCF_028314945#PM725_RS02860
HKClassicCurrent focus
34 161-36 851 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027661245#PGP58_RS08435Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0414880
Simplified PFAM architecture for HKOC_0414880
PFAM domain coverage: 495 / 896 aa (55.2%)
1 aa896 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[23-232] | DUF4118[399-504] | HisKA[668-735] | HATPase_c[780-890]
- Domain count: 4
- Matched identifier: HKOC_0414880
- Positioned domains: KdpD 23-232 ; DUF4118 399-504 ; HisKA 668-735 ; HATPase_c 780-890
Cluster members and taxonomy
Representative gene: GCF_027661245#PGP58_RS08435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_028314945
AssemblyASM2831494v1 · Scaffoldhaploid
Genome composition3 503 162 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key