1 Response_reg#1
6-115 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:6:1.35e-32:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PM725_RS02845
Response regulator OmpR family
Thomasclavelia ramosa · GCF_028314945
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_028314945#PM725_RS02845Stable P2CS identifier used across views.
GenomeGCF_028314945Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:149:7.3e-26:225:77:77- Raw architecture: Response_reg:6:1.35e-32:115:111:111#Trans_reg_C:149:7.3e-26:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_028314945::NZ_JAQLKH010000004.1::G00021
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span31277-36851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPM725_02845RefSeq proteinWP_003535603.1
Context group ID
GCF_028314945::NZ_JAQLKH010000004.1::G00021Context members
PM725_RS02845PM725_RS02850PM725_RS02855PM725_RS02860
Partner locus tags
PM725_RS02845PM725_RS02850PM725_RS02855PM725_RS02860
Partner old locus tags
PM725_02845PM725_02850PM725_02855PM725_02860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535603.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q3A813Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q3A813_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPM725_RS02845Primary locus identifier stored in the genes table.
Old locus tagPM725_02845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQLKH010000004.1Sequence record reported by the local genomic context database.
Genomic interval31 277-31 960 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 277-36 851 ntGCF_028314945::NZ_JAQLKH010000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028314945::NZ_JAQLKH010000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQLKH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span31 277-36 851 nt5 575 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 277 nt36 851 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
PM725_RS02845GCF_028314945#PM725_RS02845
RROmpRCurrent focus
31 277-31 960 nt · Reverse (-)
PM725_RS02850GCF_028314945#PM725_RS02850
HKClassic
31 953-33 413 nt · Reverse (-)
PM725_RS02855GCF_028314945#PM725_RS02855
RROmpR
33 458-34 168 nt · Reverse (-)
PM725_RS02860GCF_028314945#PM725_RS02860
HKClassic
34 161-36 851 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1354482
Simplified PFAM architecture for RROC_1354482
PFAM domain coverage: 187 / 227 aa (82.4%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-225]
- Domain count: 2
- Matched identifier: RROC_1354482
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-225 ; Trans_reg_C 149-225
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_028314945
AssemblyASM2831494v1 · Scaffoldhaploid
Genome composition3 503 162 bp · 31,0% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key