1 Response_reg#1
6-110 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:6:7.65e-21:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
PMN85_RS03430
Response regulator LytTR family
Bifidobacterium pseudocatenulatum · GCF_028312105
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_028312105#PMN85_RS03430Stable P2CS identifier used across views.
GenomeGCF_028312105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 238 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.2% of protein
Raw token
LytTR:139:4.25e-17:229:97:98- Raw architecture: Response_reg:6:7.65e-21:110:108:111#LytTR:139:4.25e-17:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_028312105::NZ_JAQKRZ010000022.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2627-3343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagPMN85_03425RefSeq proteinWP_065447452.1
Context group ID
GCF_028312105::NZ_JAQKRZ010000022.1::G00015Context members
PMN85_RS03430
Partner locus tags
PMN85_RS03430
Partner old locus tags
PMN85_03425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_065447452.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW6A148Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW6A148_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagPMN85_RS03430Primary locus identifier stored in the genes table.
Old locus tagPMN85_03425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAQKRZ010000022.1Sequence record reported by the local genomic context database.
Genomic interval2 627-3 343 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 627-3 343 ntGCF_028312105::NZ_JAQKRZ010000022.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_028312105::NZ_JAQKRZ010000022.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAQKRZ010000022.1All displayed genes belong to this local TCS context.
Neighborhood span2 627-3 343 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 627 nt3 343 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
PMN85_RS03430GCF_028312105#PMN85_RS03430
RRLytTRCurrent focus
2 627-3 343 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685965#BAD08_RS09050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0937172
Simplified PFAM architecture for RROC_0937172
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-110] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0937172
- Positioned domains: Response_reg 6-110 ; Response_reg 6-110 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_001685965#BAD08_RS09050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_028312105
AssemblyASM2831210v1 · Contighaploid
Genome composition2 223 550 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 27 · HK 11 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key